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Εξειδίκευση τύπου : Άρθρο σε επιστημονικό περιοδικό
Τίτλος: An Integrated Bioinformatics Analysis towards the Identification of Diagnostic, Prognostic and Predictive Key Biomarkers for Urinary Bladder Cancer
Δημιουργός/Συγγραφέας: Sarafidis, Michail
Lambrou, George I.
[EL] Ζουμπουρλής, Βασίλης[EN] Zoumpourlis, Vassilissemantics logo
Koutsouris, Dimitrios
Ημερομηνία: 2022-07-10
Γλώσσα: Αγγλικά
ISSN: 2072-6694
DOI: 10.3390/cancers14143358
Άλλο: 35884419
Περίληψη: Bladder cancer (BCa) is one of the most prevalent cancers worldwide and accounts for high morbidity and mortality. This study intended to elucidate potential key biomarkers related to the occurrence, development, and prognosis of BCa through an integrated bioinformatics analysis. In this context, a systematic meta-analysis, integrating 18 microarray gene expression datasets from the GEO repository into a merged meta-dataset, identified 815 robust differentially expressed genes (DEGs). The key hub genes resulted from DEG-based protein-protein interaction and weighted gene co-expression network analyses were screened for their differential expression in urine and blood plasma samples of BCa patients. Subsequently, they were tested for their prognostic value, and a three-gene signature model, including COL3A1, FOXM1, and PLK4, was built. In addition, they were tested for their predictive value regarding muscle-invasive BCa patients' response to neoadjuvant chemotherapy. A six-gene signature model, including ANXA5, CD44, NCAM1, SPP1, CDCA8, and KIF14, was developed. In conclusion, this study identified nine key biomarker genes, namely ANXA5, CDT1, COL3A1, SPP1, VEGFA, CDCA8, HJURP, TOP2A, and COL6A1, which were differentially expressed in urine or blood of BCa patients, held a prognostic or predictive value, and were immunohistochemically validated. These biomarkers may be of significance as prognostic and therapeutic targets for BCa.
Τίτλος πηγής δημοσίευσης: Cancers
Τόμος/Κεφάλαιο: 14
Τεύχος: 14
Θεματική Κατηγορία: [EL] Βιοπληροφορική[EN] Bioinformaticssemantics logo
[EL] Νεοπλάσματα. Όγκοι. Ογκολογία (περ. Καρκίνος, κακινογόνες ουσίες)[EN] Neoplasms. Tumors. Oncology (Incl.cancer, carcinogens)semantics logo
[EL] Βιοχημεία[EN] Biochemistrysemantics logo
[EL] Στατιστική[EN] Statisticssemantics logo
Λέξεις-Κλειδιά: bioinformatics
biomarkers
bladder cancer
diagnosis
hub genes
meta-analysis
microarrays
prediction
prognosis
urologic cancer
Κάτοχος πνευματικών δικαιωμάτων: © 2022 by the authors. Licensee MDPI, Basel, Switzerland.
Όροι και προϋποθέσεις δικαιωμάτων: This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).
Ηλεκτρονική διεύθυνση στον εκδότη (link): https://www.mdpi.com/2072-6694/14/14/3358
Εμφανίζεται στις συλλογές:Ινστιτούτο Χημικής Βιολογίας - Επιστημονικό έργο

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