Εξειδίκευση τύπου :	Άρθρο σε επιστημονικό περιοδικό
Τίτλος:	HECTOR: Enabling Microarray Experiments over the Hellenic Grid Infrastructure
Δημιουργός/Συγγραφέας:	Kanaris, Ioannis Mylonakis, Vasileios [EL] Χατζηιωάννου, Αριστοτέλης[EN] Chatziioannou, Aristotelis Maglogiannis, Ilias Soldatos, John
Εκδότης:	Springer
Τόπος έκδοσης:	Dordrecht
Ημερομηνία:	2009-09
Γλώσσα:	Αγγλικά
ISSN:	1570-7873
DOI:	10.1007/s10723-009-9123-6
Περίληψη:	Biologists, medical experts, biochemical engineers and researchers working on DNA microarray experiments are increasingly turning on Grid computing with the scope of leveraging the Grid's computing power, immense storage resources, and quality of service to the expedient processing of a wide range of datasets. In this paper we present a combined experience of grid application experts and bioinformatics scientists in deploying a pilot service enabling computationally efficient processing and analysis of data stemming from microarray experiments. This pilot service is accessible over the Hellenic portion of the EGEE grid and has been demonstrated in the scope of several public events. We highlight the process of grid application enablement, grid deployment challenges, as well as lessons learnt from a bi-annual effort to port and deploy a MATLAB DNA microarray application on a production grid. In addition to describing the parallelization of the application, we also emphasize on the development of a distributed federated database for storing and post-processing the results of the microarray experiments. Overall we believe that our experience could be proven valuable not only to microarray data scientists but also to other Grid users that intend to Grid-enable and deploy their applications.
Τίτλος πηγής δημοσίευσης:	Journal of Grid Computing
Τόμος/Κεφάλαιο:	7
Τεύχος:	3
Σελίδες:	395-416
Θεματική Κατηγορία:	[EL] Ηλεκτρονικοί υπολογιστές. Επιστήμη των υπολογιστών[EN] Electronic computers. Computer science
Λέξεις-Κλειδιά:	Grid application enablement Microarray experiments Hellas grid EGEE gLite MPI Computer Science, Information Systems Computer Science, Theory & Methods
Αξιολόγηση από ομότιμους (peer reviewed):	Ναι
Κάτοχος πνευματικών δικαιωμάτων:	© SPRINGER
Ηλεκτρονική διεύθυνση περιοδικού (link) :	http://www.springerlink.com/openurl.asp?genre=journal&issn=1570-7873
ΙΒΦΧΒ: αρχειακή συλλογή:	Ινστιτούτο Βιολογικών Ερευνών και Βιοτεχνολογίας (ΙΒΕΒ) (έως 2012)
Εμφανίζεται στις συλλογές:	Ινστιτούτο Χημικής Βιολογίας - Επιστημονικό έργο